There are two ways to record advance payments paid to your company suppliers/DCOs.
While creating a purchase payment you can select Is Advance.
Learn more about Purchase Payments in this article here
Once you have create an advance payment entry, simply go to Purchase - Invoices - click on the supplier invoice - click on Apply Purchase Payment - enter the amount - Apply - you will see the amounts have been adjusted on the supplier invoice
You can add advances for your suppliers at a duty level by clicking on the small gear icon next to the duty listing and selecting Add Advance Purchase Payment. This will capture the duty ID in the purchase payment section.
Go to Duties - Completed - click on the small gear icon next to a duty listing completed by a supplier - click on Add advance purchase payment - Enter amount - Add comment - Save
Once you have generated the purchase invoice, open it and click on the Add advance button - enter the amount you wish to apply - The amount will be deducted from the final total to be paid.
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